Eurexpress

Genes2Patterns

The PatternViewer program is a comprehensive tool to see all of the discovered patterns and their known biological relevance using various functional annotation databases.

	Start the PatternViewer program and read in all of the required data files generated by different programs: 1. Expression data (.txt) 2. Pattern file (.ptn) 3. Background annotation file (e.g.:go) 4. Enrichment file (.enr) 5. False discovery rate file (.fdr) The program will automatically send you to the "False positive rates" tab.
	The second column shows the number of patterns (or more precisely, the number of pattern-annotation term pairs) with at most p-value given in the first column. The last column displays the expected number of false positive patterns. By selecting one of the rows the program displays the patterns belonging to that category in the â€œEnrichment analysisâ€ tab.
	Enrichment analysis tab.
	Pattern viewer tab.